You can already do this? Unless I'm mistaken in what you're asking, all you have to do is adjust the reshade.ini and tell it to grab the shaders and textures from a directory.
I have one folder for everything reshade related and the reshade.dll and reshade.ini are the only two files in the game folders.
Update things on your own when you see fit, it's cleaner and much easier than dealing with a full reshade directory in each game location.
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